I'd love to confuse you all, all over again when showing you cars/vehicles with Dog leg gearboxes and Right foot clutch pedals !
Another downside with Auto's is they do sap the engines power and are heavier in terms of fuel consumption - and often to a substantial proportion. My current 03 Auto 5 Series 'Wagon' gets around 31MPG around town with occasional 'spirited' driving - a similar manual car would get around 35-37mpg.
Downside to manuals as already mentioned is the stop start driving in built up/city centres can soon really make your leg and foot ache - especially on a high performance variant car! - there are ways to 'lighten' the clutch pedal feel, but can be expensive to do.
I do prefer manual gearboxes as I'm a sportier type driver, however - to put back some 'feel' and the performance loss of the auto wagon I have, I recently had the electronics re-mapped for higher performance
and it's made a a fantastic difference !
Overall, guess you look at the positives for each and weigh up against the negatives for each dependant on your own situation and make a decision accordingly.
Cheers! DtM! West London & Slough UK!