I think if you micro it, it is like steaming it, but if you roast it, it gets a bit more carmelized in a way. I am not sure if it would make a big deal in the end taste of the soup in the end, but I usually roast my pumpkin or squash. An easy way to rosast a butternut squash is just put it in the oven whole. After about and hour, cut it in half, remove the seeds and scoop out the flesh. At that point it is pretty well mashed.